
 Date/Time: 02/19/2008 at 17:30:58.746 (hhmmss.sss)


 Contents of fun3d.nml parameters given here...
 (Actual fun3d.nml file captured in file temp.commands)

 &VERSION_NUMBER INPUT_VERSION = 2., NAMELIST_VERBOSITY = 'on                                      ', 
 
 /

 &PROJECT PROJECT_ROOTNAME = 'om6p01                                                   ', 
 CASE_TITLE = 'CASE TITLE                                                  ', 
 PART_PATHNAME = '                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ', 
 
 /

 &GOVERNING_EQUATIONS EQN_TYPE = 'cal_perf_compress                       ', 
 ARTIFICIAL_COMPRESS = 15., VISCOUS_TERMS = 'laminar                                 ', 
 CHEMICAL_KINETICS = 'finite-rate                             ', 
 THERMAL_ENERGY_MODEL = 'non-equilib                             ', 
 
 /
 NOTE: artificial_compress, chemical_kinetics, and
       thermal_energy_model not used for
       cal_perf_compress path

 &REFERENCE_PHYSICAL_PROPERTIES GRIDLENGTH_CONVERSION = 1., 
 DIM_INPUT_TYPE = 'nondimensional                          ', 
 TEMPERATURE_UNITS = 'Rankine                                 ', 
 MACH_NUMBER = 0.3, REYNOLDS_NUMBER = 1000000., VELOCITY = 0., 
 DENSITY = 0., TEMPERATURE = 460., TEMPERATURE_WALLDEFAULT = 0., 
 ANGLE_OF_ATTACK = 2., ANGLE_OF_YAW = 0., 
 /
 NOTE: temperature corresponds to  255.55555555555554  deg Kelvin
 NOTE: temperature_walldefault not used for cal_perf paths
 NOTE: velocity and density not used for cal_perf paths

 &FORCE_MOMENT_INTEG_PROPERTIES AREA_REFERENCE = 1., X_MOMENT_LENGTH = 1., 
 Y_MOMENT_LENGTH = 1., X_MOMENT_CENTER = 0.25, Y_MOMENT_CENTER = 0., 
 Z_MOMENT_CENTER = 0., 
 /
 NOTE: currently scaling sref,cref,bref,xmc,ymc,zmc by
       gridlength_conversion

 &INVISCID_FLUX_METHOD FLUX_LIMITER = 'none                                    ', 
 FIRST_ORDER_ITERATIONS = 0, FLUX_CONSTRUCTION = 'roe                                     ', 
 RHS_U_EIGENVALUE_COEF = 0., LHS_U_EIGENVALUE_COEF = 0., 
 
 /
 NOTE: currently, rhs_u_eigenvalue_coef and
       lhs_u_eigenvalue_coef not used for cal_perf paths

 &MOLECULAR_VISCOUS_MODELS PRANDTLNUMBER_MOLECULAR = 0.72, 
 
 /

 &TURBULENT_DIFFUSION_MODELS TURB_MODEL = 'sa                                      ', 
 TURB_INTENSITY = 0.002, TURB_VISCOSITY_RATIO = 0.210438, 
 RE_STRESS_MODEL = 'linear                                  ', 
 TURB_COMPRESS_MODEL = 'off                                     ', 
 TURB_CONDUCTIVITY_MODEL = 'off                                     ', 
 PRANDTLNUMBER_TURBULENT = 0.9, SCHMIDTNUMBER_TURBULENT = 1., 
 
 /
 NOTE: case is inviscid or laminar; none of the
       turbulent_diffusion_models information is being used

 &NONLINEAR_SOLVER_PARAMETERS TIME_ACCURACY = 'steady                                  ', 
 TIME_STEP_NONDIM = 5., PSEUDO_TIME_STEPPING = 'on                                      ', 
 SUBITERATIONS = 5, SCHEDULE_NUMBER = 2, SCHEDULE_ITERATION = 1, 
 50, 8*0, SCHEDULE_CFL = 10., 200., 8*0., SCHEDULE_CFLTURB = 10., 
 200., 8*0., INVIS_RELAX_FACTOR = 2., VISC_RELAX_FACTOR = 1., 
 
 /
 NOTE: simulation is steady: time_step_nondim,
       pseudo_time_stepping, subiterations all ignored
 NOTE: invis_relax_factor and visc_relax_factor
       not used for cal_perf paths

 &LINEAR_SOLVER_PARAMETERS MEANFLOW_SWEEPS = 15, TURBULENCE_SWEEPS = 10, 
 LINE_IMPLICIT = 'off                                     ', 
 
 /
 NOTE: case is inviscid or laminar; turbulence_sweeps
       is not being used

 &CODE_RUN_CONTROL STEPS = 500, STOPPING_TOLERANCE = 0.0001, 
 RESTART_WRITE_FREQ = 100, RESTART_READ = 'off                                     ', 
 JACOBIAN_EVAL_FREQ = 3, 
 /

 &SPECIAL_PARAMETERS LARGE_ANGLE_FIX = 'off                                     ', 
 
 /

 No optional namelist input : namelist.input                                                                  

 === ACTIVATED Command Line Arguments ===
 --skip_qsave : Skip the qsave information for the adjoint in the restart files
 --adapt_cycles : Number of grid output cycles (requires an integer) sets adapt_switch =  T 1
--adapt_coarsen : Used to limit coarsening allowed. requires real, sets adapt_switch =   1.000000
 --adapt_feature_type : Use to control formulation of metric for feature based adaption =  0
--adapt_maxedge : Limit adjoint adaptation max edge length (requires real) =       1.00
--adapt_maxratio : Limit adjoint adaptation aspect ratio (requires real) =      10.00
--output_error : Output error tolerance used to compute the adjoint adaptation scaling (real) =   0.1000000E-03
--adapt_freezebl : Freeze boundary layer nodes above this slen value (negative deactivates) =   0.020000
 --adapt_smooth_surface : Allow the refine adaptation mechanics to smooth nodes on the boundary
 --adapt_feature_debug : use only manufactured functions for adaptation
--adapt_project : Adapted grid output project (requires a quoted string) = om6p02
 === end of ACTIVATED Command Line Arguments ===

 running feature-based adaptation in debug mode
 ...setting all adaptation key variables to manufact

 solution dimensioning parameters
   eqn_set  =   0
   ndim     =   5
   n_q      =   5
   njac     =   5
   adim     =   5
   n_tot    =   5
   n_grd    =   5
   n_turb   =   0

 reading orig grid project om6p01...
  NOT reading flow restart.  Using manufactured data instead
 refine feature_based_adaptation
 sorting global2local indicies...
 filling orig grid local part vectors...
 resetting level 1 lmpi_xfer...
 initializing feature adapt structure...
  initialized feature_adapt structure for manufact_delta_manufact_hess            
 getting necessary scalar differences...
 ...Using manufactured function for key_var
 ...generating manufactured solution for adaptation.
 getting necessary tensors/hessians...
 ...Using manufactured function for key_var
 ...generating manufactured solution for adaptation.
 combining scalars and tensors for 
        anisotropic metric 
 construct feature_adapt%adapt
 construct feature_adapt%metric
 construct anisotropic part of metric
 form anisotropic_adapt_parameter
 Verifying and repairing metric
 call adapt driver refine_adapt
 Calling refine init
 Freeze boundary layer below  0.02
 freeze surface file not opened, returning om6p01.freeze
 Projecting all faces for parameters
 Evaluate CAD Parameters for Verification...
 gridpj update       0.00096899 sec. (wallclock)
 min aspect ratio 0.14866134
 min aspect ratio 0.14866134
 swap   interior in color     7.64873552 sec. (wallclock)
 sync   interior in color     0.00033283 sec. (wallclock)
 swap   ghosts   in color     0.00053310 sec. (wallclock)
 min aspect ratio 0.16234071
 smooth interior in color     8.94077110 sec. (wallclock)
 smooth ghosts   in color     8.94657326 sec. (wallclock)
 min aspect ratio 0.16234071
 swap   interior in color     6.36898041 sec. (wallclock)
 sync   interior in color     0.00031853 sec. (wallclock)
 swap   ghosts   in color     0.00054550 sec. (wallclock)
 min aspect ratio 0.16234071
 smooth interior in color     7.81248283 sec. (wallclock)
 smooth ghosts   in color     7.81877327 sec. (wallclock)
 min aspect ratio 0.16234071
 adapt cycle... 1
 adapt  interior     0.33274460 sec. (wallclock)
 adapt  ghost        0.30178833 sec. (wallclock)
 adapt global node count     8658
 min aspect ratio 0.16234071
 swap   interior in color     7.28671646 sec. (wallclock)
 sync   interior in color     0.00054169 sec. (wallclock)
 swap   ghosts   in color     0.00093842 sec. (wallclock)
 min aspect ratio 0.16234071
 smooth interior in color    13.14123917 sec. (wallclock)
 smooth ghosts   in color    13.15303040 sec. (wallclock)
 min aspect ratio 0.16234071
 swap   interior in color     6.77913284 sec. (wallclock)
 sync   interior in color     0.00054169 sec. (wallclock)
 swap   ghosts   in color     0.00093079 sec. (wallclock)
 min aspect ratio 0.16234071
 smooth interior in color    11.12500381 sec. (wallclock)
 smooth ghosts   in color    11.13986588 sec. (wallclock)
 min aspect ratio 0.16234071
 save GeoSDK/CAPRI restart directly from refine...
 get the grid and solution from refine...
 there are  1   processors.
 eliminate unused     0.01646423 sec. (wallclock)
 The adapted grid has      8658 nodesg and      47948 cellsg
 reload nodes...
  edge_swap_c2n : max dot  0.996087948499 max angle  174.9303077649
   cells          0 of      47948 greater than 178.00 deg ( 0.999390827019 )
 filling level01 local part vectors...
 get boundary faces...
  doing the load balancing 
 load balance (avgPart/maxPart) 1.00000
 get new load balanced part vector...
  share ParMetis global numbering...
  build adj for ParMetis...
  calling ParMetis...
 Warning! partKway was not compiled with -DHAVE_MPI ParMetis disabled
 migrate grid nodes to load balanced parts...
  count up migrating nodes...
  copy migrating nodes...
  mail migrating nodes...
  pack existing nodes...
  resize nodes...
  unpack migrated nodes...
  reform sorted g2l...
 migrate grid cells to load balanced parts...
  count up migrating cells...
  copy migrating cells...
  mail migrating cells...
  pack static cells...
  create new level 1 nodes...
  add migrated cells...
 migrate grid faces to load balanced parts...
 filling level01 local part vectors...
 load balance (avgPart/maxPart) 1.00000
 creating cell level 2...
  send node requests to servers...
  convert global index to local index...
  return cell requests to clients...
  create new level 2 nodes...
  add level 2 cells...
  resize tight...
 filling level 2 local part vectors...
 set up level 1 node lmpi_xfer send and rec...
 set up level 2 node lmpi_xfer send and rec...
 construct node 2 cell (n2c) array...
 find boundary cells...
 find phantom adjoint boundary faces...
 renumber boundary nodes...
 test boundary cells...
 creating loc edges...
 creating remaining edges...
 freeing node 2 cell (n2c) array...
 creating unique edge local to global numbering...
 share ghost edge local to global numbering...
  send edge requests to servers...
  construct node 2 edge (n2e) array...
  test n2e...
  servers find edges...
  return edge requests to clients...
  set client edge local 2 global...
  reset edge lmpi_xfer send, recieve pairs...
  test lmpi_xfer edge...
 deallocate part and g2l helper arrays...
 populate ghost xyzs...
 allocate grid reals...
 make inviscid metrics...
 computing distance function...
  construct_global_boundary...
  collecting  1467  faces...
  compute_facel2g...
  there are  745  viscous nodes...
  apply local numbering to faces...
  populate surface xyz...
  sort faces...
  calculate node 2 face (n2f) array...
  find closest surface node...
  find closer surface edge...
  find closer surface face...
  compute_min_wall_spacing...
 nelem 1 maxnode 4
 The average  minimum wall spacing is  0.03545008053124922
 The smallest minimum wall spacing is  0.0068241092071041265
 The largest  minimum wall spacing is  0.11802827399513312
 distance function complete.
 refineGetGrid complete.
 grid and solution derived types returned from refine.
 reinitializing strong boundary conditions...
 strong bcs reinitialized.
 grid project set to >om6p02<
 free refine data structure...
 refine data structure deallocated.
 refine_adaptation_driver:refine_adapt Done.
 finished with adapt driver refine_adapt
 writing adapted mesh part files, om6p02
  Skipping solution restart flow output, in debug mode T F F
 Done.
